STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR02286.1Type II secretion system protein H (GspH). (171 aa)    
Predicted Functional Partners:
SIR02246.1
Type II secretion system protein J (GspJ).
 
 0.997
SIR02221.1
Type II secretion system protein K (GspK).
 
 
 0.990
SIR02263.1
Type II secretion system protein I (GspI).
 
  
 0.971
SIR02309.1
Type II secretion system protein G (GspG).
 
 
 0.964
SIR02201.1
Type II secretion system protein L (GspL); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.963
SIR02176.1
Type II secretory pathway, component PulM.
 
   
 0.957
SIR02404.1
General secretion pathway protein D.
 
  
 0.937
SIR02380.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.927
SIR02452.1
Type II secretion system protein C (GspC).
 
  
 0.922
SIR02329.1
General secretion pathway protein F.
 
  
 0.921
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.