STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR06427.1Transcriptional regulator, IclR family. (259 aa)    
Predicted Functional Partners:
SIQ59452.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.881
SIQ36274.1
Transcriptional regulator, IclR family.
  
     0.742
SIQ40774.1
Transcriptional regulator, IclR family.
  
     0.738
SIR06400.1
Arylsulfatase A.
 
     0.594
SIP89992.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.571
SIQ41581.1
Phosphate acetyltransferase/phosphate butyryltransferase.
    
 0.561
SIP89976.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.553
SIR06445.1
Nucleotide-binding universal stress protein, UspA family.
       0.533
mhpB
2,3-dihydroxyphenylpropionate 1,2-dioxygenase; Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6- ketononatrienedioate, respectively; Belongs to the LigB/MhpB extradiol dioxygenase family.
 
     0.518
SIR06380.1
TRAP transporter, 4TM/12TM fusion protein.
 
     0.515
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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