Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aflv_2299Uncharacterized protein conserved in bacteria. (380 aa)    
Predicted Functional Partners:
Aflv_2298
Uncharacterized conserved protein; Belongs to the UPF0342 family.
       0.794
Aflv_2300
Predicted protein.
       0.775
Aflv_2408
Uncharacterized protein conserved in bacteria, Cys rich.
  
     0.673
Aflv_2301
Uncharacterized conserved protein.
       0.618
yhaX
HAD superfamily hydrolase.
       0.596
Aflv_2302
Transcriptional regulator.
       0.534
yabE
Uncharacterized protein conserved in bacteria.
     
 0.494
Aflv_0348
Uncharacterized conserved protein.
  
     0.474
Aflv_2344
Predicted permease.
  
     0.448
hemZ
Coproporphyrinogen III oxidase hemZ.
       0.441
Your Current Organism:
Anoxybacillus flavithermus
NCBI taxonomy Id: 491915
Other names: A. flavithermus WK1, Anoxybacillus flavithermus WK1, Anoxybacillus flavithermus str. WK1, Anoxybacillus flavithermus strain WK1
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