Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF53269.1 | AEF53270.1 | Mar181_0201 | Mar181_0202 | PFAM: Major facilitator superfamily MFS-1; KEGG: bgf:BC1003_4080 major facilitator superfamily protein. | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | 0.563 |
AEF53270.1 | AEF53269.1 | Mar181_0202 | Mar181_0201 | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | PFAM: Major facilitator superfamily MFS-1; KEGG: bgf:BC1003_4080 major facilitator superfamily protein. | 0.563 |
AEF53270.1 | AEF53682.1 | Mar181_0202 | Mar181_0625 | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | PFAM: Protein of unknown function DUF2164; KEGG: abo:ABO_1538 hypothetical protein. | 0.411 |
AEF53270.1 | AEF54877.1 | Mar181_0202 | Mar181_1839 | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | KEGG: xne:XNC1_1567 putative recombination protein with metallo-hydrolase domain; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein. | 0.422 |
AEF53270.1 | gcvP | Mar181_0202 | Mar181_1680 | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.624 |
AEF53682.1 | AEF53270.1 | Mar181_0625 | Mar181_0202 | PFAM: Protein of unknown function DUF2164; KEGG: abo:ABO_1538 hypothetical protein. | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | 0.411 |
AEF54877.1 | AEF53270.1 | Mar181_1839 | Mar181_0202 | KEGG: xne:XNC1_1567 putative recombination protein with metallo-hydrolase domain; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein. | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | 0.422 |
gcvP | AEF53270.1 | Mar181_1680 | Mar181_0202 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | PFAM: Amino acid-binding ACT; KEGG: psb:Psyr_4699 amino acid-binding ACT. | 0.624 |