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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF54284.1PFAM: Methyladenine glycosylase; KEGG: vex:VEA_003561 hypothetical protein. (224 aa)    
Predicted Functional Partners:
AEF54283.1
PFAM: DSBA oxidoreductase; KEGG: psm:PSM_B0382 hypothetical protein.
       0.706
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.565
pdxJ
Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.508
AEF54132.1
PFAM: Uncharacterised conserved protein UCP029693; KEGG: hch:HCH_06000 hypothetical protein.
  
     0.444
AEF54282.1
BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD-like [2Fe-2S]-binding region; KEGG: pha:PSHAb0282 putative bacterioferritin-associated ferredoxin.
       0.431
AEF55088.1
KEGG: vsp:VS_II1304 hypothetical protein.
  
     0.424
AEF54287.1
PFAM: Protein of unknown function DUF1244; KEGG: fbl:Fbal_3749 protein of unknown function DUF1244.
 
     0.419
AEF54286.1
PFAM: DTW; KEGG: amc:MADE_04079 DTW domain containing protein.
       0.400
Your Current Organism:
Marinomonas posidonica
NCBI taxonomy Id: 491952
Other names: M. posidonica IVIA-Po-181, Marinomonas posidonica IVIA-Po-181, Marinomonas posidonica str. IVIA-Po-181, Marinomonas posidonica strain IVIA-Po-181, Marinomonas sp. IVIA-Po-181
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