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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF56229.1KEGG: pfs:PFLU2376 putative short-chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR. (256 aa)    
Predicted Functional Partners:
AEF54962.1
SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: cja:CJA_2773 regucalcin.
 
 0.938
AEF54685.1
SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: sde:Sde_3214 gluconolactonase.
 
 0.936
AEF54965.1
KEGG: gdj:Gdia_0389 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
  
  
 
0.905
xylA
PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Xylose isomerase, bacterial type; HAMAP: Xylose isomerase; KEGG: aat:D11S_0346 xylose isomerase; Belongs to the xylose isomerase family.
     
 0.900
AEF56230.1
Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: mes:Meso_0841 hypothetical protein.
 
     0.827
AEF56228.1
KEGG: mes:Meso_0842 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
     0.815
AEF56231.1
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: mes:Meso_0840 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.768
AEF56232.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: mes:Meso_0839 ABC transporter related; SMART: ATPase, AAA+ type, core.
       0.747
AEF56227.1
KEGG: sit:TM1040_3325 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase.
  
 
 0.688
AEF54964.1
2-dehydro-3-deoxygalactonokinase; KEGG: pat:Patl_0898 2-keto-3-deoxy-galactonokinase; PFAM: 2-keto-3-deoxy-galactonokinase; Carbohydrate kinase, FGGY, N-terminal.
 
     0.611
Your Current Organism:
Marinomonas posidonica
NCBI taxonomy Id: 491952
Other names: M. posidonica IVIA-Po-181, Marinomonas posidonica IVIA-Po-181, Marinomonas posidonica str. IVIA-Po-181, Marinomonas posidonica strain IVIA-Po-181, Marinomonas sp. IVIA-Po-181
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