STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF56479.1PFAM: Major facilitator superfamily MFS-1; KEGG: sse:Ssed_1894 permease. (401 aa)    
Predicted Functional Partners:
AEF53762.1
UPF0246 protein yaaA; KEGG: swd:Swoo_1284 hypothetical protein; HAMAP: UPF0246 protein yaaA; PFAM: Protein of unknown function DUF328; Belongs to the UPF0246 family.
  
    0.817
AEF56478.1
PFAM: Small multidrug resistance protein; KEGG: amc:MADE_00178 putative exporter protein (SMR family).
 
   
 0.711
AEF56477.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sse:Ssed_3742 putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.446
Your Current Organism:
Marinomonas posidonica
NCBI taxonomy Id: 491952
Other names: M. posidonica IVIA-Po-181, Marinomonas posidonica IVIA-Po-181, Marinomonas posidonica str. IVIA-Po-181, Marinomonas posidonica strain IVIA-Po-181, Marinomonas sp. IVIA-Po-181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.