STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK14193.1Serine/threonine-protein kinase HipA. (425 aa)    
Predicted Functional Partners:
SDK14208.1
Transcriptional regulator, y4mF family.
 
 
 
 0.998
SDK53318.1
Helix-turn-helix domain-containing protein.
    
   0.622
SDK82944.1
Transcriptional regulator, XRE family.
    
   0.622
SDK35154.1
Hypothetical protein.
  
     0.544
SDK35997.1
Serine/threonine-protein kinase HipA.
  
   
 0.472
SDK36025.1
Helix-turn-helix domain-containing protein.
  
   0.456
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
  
   0.403
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.