STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK14266.1Two component transcriptional regulator, LuxR family. (212 aa)    
Predicted Functional Partners:
SDK14427.1
Two-component system, sensor histidine kinase RpfC.
 
 
 0.990
SDK14280.1
Two-component system, NarL family, sensor histidine kinase UhpB.
 
 0.972
SDK31405.1
Two-component system, NarL family, sensor histidine kinase UhpB.
 
 0.970
SDK42543.1
Histidine kinase.
 
 0.961
SDK32553.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.926
SDK30405.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.870
SDK13432.1
Hypothetical protein.
  
 
  0.816
SDK21235.1
Signal transduction histidine kinase.
   
 0.754
SDK36093.1
Regulatory protein, luxR family.
  
     0.753
SDK36772.1
CHASE3 domain-containing protein.
   
 0.690
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.