STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK19209.1Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (290 aa)    
Predicted Functional Partners:
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.876
SDK18617.1
Pilus retraction ATPase PilT.
 
   
 0.861
SDK40043.1
Type IV pilus assembly protein PilC.
 
  
 0.846
SDK82624.1
MSHA biogenesis protein MshG.
 
  
 0.833
SDK70127.1
Type IV pilus assembly protein PilC.
 
  
 0.831
SDK40023.1
Type IV pilus assembly protein PilB.
 
 
 0.823
SDK13903.1
General secretion pathway protein F.
 
  
 0.821
SDK20662.1
Competence protein ComEC.
  
  
 0.814
SDK18594.1
Twitching motility protein PilU.
  
   
 0.806
SDK57634.1
General secretion pathway protein E.
 
 
 0.804
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.