STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK37389.1Two-component system, OmpR family, sensor kinase. (376 aa)    
Predicted Functional Partners:
SDK38605.1
Dihydrolipoamide dehydrogenase.
    
 0.994
SDK14427.1
Two-component system, sensor histidine kinase RpfC.
 
0.987
SDK37406.1
Two-component system, OmpR family, response regulator CpxR.
 
  0.969
SDK38777.1
PAS domain S-box-containing protein.
 
 
0.969
SDK31405.1
Two-component system, NarL family, sensor histidine kinase UhpB.
  
 0.947
SDK30405.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.924
SDK56259.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.861
SDK34751.1
Two-component system, OmpR family, response regulator.
  
  0.859
SDK60598.1
Two component transcriptional regulator, winged helix family.
  
  0.851
SDK20173.1
Two component transcriptional regulator, winged helix family.
  
  0.850
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.