Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK14790.1 | SDK50125.1 | SAMN05192566_0336 | SAMN05192566_1418 | 6-phosphogluconate dehydrogenase. | 6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.706 |
SDK14790.1 | SDK74788.1 | SAMN05192566_0336 | SAMN05192566_2359 | 6-phosphogluconate dehydrogenase. | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.626 |
SDK14790.1 | rpiA | SAMN05192566_0336 | SAMN05192566_1142 | 6-phosphogluconate dehydrogenase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.690 |
SDK14790.1 | rpiA-2 | SAMN05192566_0336 | SAMN05192566_1377 | 6-phosphogluconate dehydrogenase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.693 |
SDK38099.1 | rpiA | SAMN05192566_1143 | SAMN05192566_1142 | Membrane-bound lytic murein transglycosylase F; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.740 |
SDK43057.1 | SDK43157.1 | SAMN05192566_1351 | SAMN05192566_1355 | Phosphomannomutase. | Phosphoglucomutase. | 0.799 |
SDK43057.1 | SDK56701.1 | SAMN05192566_1351 | SAMN05192566_1687 | Phosphomannomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.677 |
SDK43057.1 | SDK74788.1 | SAMN05192566_1351 | SAMN05192566_2359 | Phosphomannomutase. | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.408 |
SDK43057.1 | prs | SAMN05192566_1351 | SAMN05192566_0690 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.711 |
SDK43057.1 | rpiA | SAMN05192566_1351 | SAMN05192566_1142 | Phosphomannomutase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.623 |
SDK43057.1 | rpiA-2 | SAMN05192566_1351 | SAMN05192566_1377 | Phosphomannomutase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.623 |
SDK43057.1 | tal | SAMN05192566_1351 | SAMN05192566_0842 | Phosphomannomutase. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. | 0.633 |
SDK43157.1 | SDK43057.1 | SAMN05192566_1355 | SAMN05192566_1351 | Phosphoglucomutase. | Phosphomannomutase. | 0.799 |
SDK43157.1 | SDK50125.1 | SAMN05192566_1355 | SAMN05192566_1418 | Phosphoglucomutase. | 6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.437 |
SDK43157.1 | SDK56701.1 | SAMN05192566_1355 | SAMN05192566_1687 | Phosphoglucomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.764 |
SDK43157.1 | prs | SAMN05192566_1355 | SAMN05192566_0690 | Phosphoglucomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.636 |
SDK43157.1 | rpiA | SAMN05192566_1355 | SAMN05192566_1142 | Phosphoglucomutase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.673 |
SDK43157.1 | rpiA-2 | SAMN05192566_1355 | SAMN05192566_1377 | Phosphoglucomutase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.673 |
SDK43157.1 | tal | SAMN05192566_1355 | SAMN05192566_0842 | Phosphoglucomutase. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. | 0.872 |
SDK50125.1 | SDK14790.1 | SAMN05192566_1418 | SAMN05192566_0336 | 6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 6-phosphogluconate dehydrogenase. | 0.706 |
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