STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK40800.1Uncharacterized iron-regulated membrane protein. (427 aa)    
Predicted Functional Partners:
SDK40827.1
Iron complex outermembrane recepter protein.
 
    0.848
SDK40844.1
FecR family protein.
 
     0.680
SDK40867.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.671
SDK49393.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.579
SDK41062.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.495
SDK40891.1
Iron complex outermembrane recepter protein.
 
     0.491
SDK40931.1
FecR family protein.
 
     0.465
SDK41041.1
FecR family protein.
 
     0.456
SDK53920.1
Uncharacterized iron-regulated membrane protein.
  
    0.451
SDK40997.1
FecR family protein.
 
     0.444
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
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