Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK11463.1 | SDK30468.1 | SAMN05192566_0159 | SAMN05192566_0800 | Exoribonuclease-2. | ZipA, C-terminal FtsZ-binding domain; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | 0.738 |
SDK11463.1 | SDK50250.1 | SAMN05192566_0159 | SAMN05192566_1423 | Exoribonuclease-2. | Membrane-bound lytic murein transglycosylase A; Manually curated. | 0.525 |
SDK30468.1 | SDK11463.1 | SAMN05192566_0800 | SAMN05192566_0159 | ZipA, C-terminal FtsZ-binding domain; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | Exoribonuclease-2. | 0.738 |
SDK30468.1 | SDK50250.1 | SAMN05192566_0800 | SAMN05192566_1423 | ZipA, C-terminal FtsZ-binding domain; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | Membrane-bound lytic murein transglycosylase A; Manually curated. | 0.473 |
SDK30715.1 | SDK50250.1 | SAMN05192566_0813 | SAMN05192566_1423 | Membrane-bound lytic murein transglycosylase D. | Membrane-bound lytic murein transglycosylase A; Manually curated. | 0.461 |
SDK30715.1 | rlpA | SAMN05192566_0813 | SAMN05192566_2315 | Membrane-bound lytic murein transglycosylase D. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.623 |
SDK50002.1 | SDK50250.1 | SAMN05192566_1413 | SAMN05192566_1423 | Glutamate synthase (NADH) large subunit. | Membrane-bound lytic murein transglycosylase A; Manually curated. | 0.461 |
SDK50172.1 | SDK50250.1 | SAMN05192566_1420 | SAMN05192566_1423 | Sulfur carrier protein. | Membrane-bound lytic murein transglycosylase A; Manually curated. | 0.465 |
SDK50172.1 | apaG | SAMN05192566_1420 | SAMN05192566_1422 | Sulfur carrier protein. | ApaG protein. | 0.657 |
SDK50172.1 | thiG | SAMN05192566_1420 | SAMN05192566_1421 | Sulfur carrier protein. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
SDK50172.1 | ubiC | SAMN05192566_1420 | SAMN05192566_1424 | Sulfur carrier protein. | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.408 |
SDK50250.1 | SDK11463.1 | SAMN05192566_1423 | SAMN05192566_0159 | Membrane-bound lytic murein transglycosylase A; Manually curated. | Exoribonuclease-2. | 0.525 |
SDK50250.1 | SDK30468.1 | SAMN05192566_1423 | SAMN05192566_0800 | Membrane-bound lytic murein transglycosylase A; Manually curated. | ZipA, C-terminal FtsZ-binding domain; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | 0.473 |
SDK50250.1 | SDK30715.1 | SAMN05192566_1423 | SAMN05192566_0813 | Membrane-bound lytic murein transglycosylase A; Manually curated. | Membrane-bound lytic murein transglycosylase D. | 0.461 |
SDK50250.1 | SDK50002.1 | SAMN05192566_1423 | SAMN05192566_1413 | Membrane-bound lytic murein transglycosylase A; Manually curated. | Glutamate synthase (NADH) large subunit. | 0.461 |
SDK50250.1 | SDK50172.1 | SAMN05192566_1423 | SAMN05192566_1420 | Membrane-bound lytic murein transglycosylase A; Manually curated. | Sulfur carrier protein. | 0.465 |
SDK50250.1 | apaG | SAMN05192566_1423 | SAMN05192566_1422 | Membrane-bound lytic murein transglycosylase A; Manually curated. | ApaG protein. | 0.572 |
SDK50250.1 | rlpA | SAMN05192566_1423 | SAMN05192566_2315 | Membrane-bound lytic murein transglycosylase A; Manually curated. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.550 |
SDK50250.1 | thiG | SAMN05192566_1423 | SAMN05192566_1421 | Membrane-bound lytic murein transglycosylase A; Manually curated. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.565 |
SDK50250.1 | ubiA | SAMN05192566_1423 | SAMN05192566_1425 | Membrane-bound lytic murein transglycosylase A; Manually curated. | 4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.689 |
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