STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK69724.1Putative sigma-54 modulation protein. (108 aa)    
Predicted Functional Partners:
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 
 0.983
rpmC
LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.980
rpsI
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.978
rpmA
LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.
    
 
 0.978
rpmG
LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.978
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
  
   0.977
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.977
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.976
rpsP
Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.976
rplO
LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.976
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.