STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK70127.1Type IV pilus assembly protein PilC. (399 aa)    
Predicted Functional Partners:
SDK70147.1
General secretion pathway protein E/type IV pilus assembly protein PilB; Manually curated.
 
   0.978
SDK13881.1
General secretion pathway protein E.
  
   0.908
SDK40023.1
Type IV pilus assembly protein PilB.
  
   0.908
SDK57634.1
General secretion pathway protein E.
  
   0.908
SDK82649.1
MSHA biogenesis protein MshE.
  
   0.908
SDK70046.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
    0.867
SDK70188.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
 
    0.866
SDK19209.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.831
SDK18617.1
Pilus retraction ATPase PilT.
 
   
 0.778
SDK70103.1
Hypothetical protein.
       0.777
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.