STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK79100.1Transcriptional regulator, AraC family. (336 aa)    
Predicted Functional Partners:
SDK50002.1
Glutamate synthase (NADH) large subunit.
    
  0.710
SDK68229.1
Chemotaxis signal transduction protein.
  
     0.584
SDK61495.1
Hypothetical protein.
  
     0.546
SDK11049.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
  
     0.518
SDK54036.1
Hypothetical protein.
  
     0.494
SDK79080.1
Conserved hypothetical protein.
  
     0.492
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.491
SDK13520.1
TonB-dependent Receptor Plug Domain.
  
     0.469
SDK78979.1
Methylamine dehydrogenase accessory protein MauD.
  
     0.454
SDK82770.1
Hypothetical protein.
  
     0.440
Your Current Organism:
Methylophilus rhizosphaerae
NCBI taxonomy Id: 492660
Other names: KACC 13099, M. rhizosphaerae, Methylophilus rhizosphaerae Madhaiyan et al. 2009, Methylophilus sp. CBMB127, Methylophilus sp. CBMB145, NCCB 100233, strain CBMB127
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.