OBX26103.1 protein (Gelidibacter algens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OBX26103.1

RNA-binding transcriptional accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)

Predicted Functional Partners:

rpoA

0.910

rpoB

0.867

OBX26262.1

0.855

OBX24714.1

0.657

OBX25239.1

0.643

OBX24708.1

0.597

OBX26897.1

0.590

OBX26350.1

0.590

OBX26287.1

0.590

OBX25019.1

0.590

Your Current Organism:

Gelidibacter algens

NCBI taxonomy Id: 49280
Other names: ACAM 536, ATCC 700364, DSM 12408, G. algens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBX24708.1	OBX24714.1	A9996_13905	A9996_13940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
OBX24708.1	OBX26103.1	A9996_13905	A9996_06125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	RNA-binding transcriptional accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
OBX24708.1	OBX26262.1	A9996_13905	A9996_05655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
OBX24708.1	rpoA	A9996_13905	A9996_14010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.744
OBX24708.1	rpoB	A9996_13905	A9996_01890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.809
OBX24714.1	OBX24708.1	A9996_13940	A9996_13905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.783
OBX24714.1	OBX25019.1	A9996_13940	A9996_12010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
OBX24714.1	OBX25239.1	A9996_13940	A9996_10970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.543
OBX24714.1	OBX26103.1	A9996_13940	A9996_06125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding transcriptional accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
OBX24714.1	OBX26262.1	A9996_13940	A9996_05655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
OBX24714.1	OBX26287.1	A9996_13940	A9996_05800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
OBX24714.1	OBX26350.1	A9996_13940	A9996_04735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aerotolerance regulator BatC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
OBX24714.1	OBX26897.1	A9996_13940	A9996_02180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.543
OBX24714.1	rpoA	A9996_13940	A9996_14010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.981
OBX24714.1	rpoB	A9996_13940	A9996_01890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
OBX25019.1	OBX24714.1	A9996_12010	A9996_13940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
OBX25019.1	OBX26103.1	A9996_12010	A9996_06125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding transcriptional accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OBX25019.1	OBX26262.1	A9996_12010	A9996_05655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
OBX25019.1	rpoA	A9996_12010	A9996_14010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.733
OBX25019.1	rpoB	A9996_12010	A9996_01890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.667