STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBX25291.1Fe-S cluster assembly protein SufD; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)    
Predicted Functional Partners:
OBX25292.1
Fe-S cluster assembly ATPase SufC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OBX25290.1
Cysteine sulfinate desulfinase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.995
OBX25287.1
FeS assembly SUF system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.925
OBX25288.1
Fe-S metabolism protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.822
OBX26935.1
Aminotransferase class V; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.773
OBX25768.1
Selenocysteine lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.744
OBX25294.1
[Fe-S]-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.
  
 
 0.697
OBX25293.1
Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.639
OBX22852.1
Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.
  
 
 0.595
OBX25289.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.448
Your Current Organism:
Gelidibacter algens
NCBI taxonomy Id: 49280
Other names: ACAM 536, ATCC 700364, DSM 12408, G. algens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.