STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBX22874.1Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
OBX22876.1
Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.869
OBX22875.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
OBX27252.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.831
OBX22868.1
TIGR03643 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
OBX22873.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.619
OBX22871.1
Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.612
OBX22869.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.560
OBX25349.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.535
OBX26461.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.512
OBX22870.1
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.
 
     0.511
Your Current Organism:
Gelidibacter algens
NCBI taxonomy Id: 49280
Other names: ACAM 536, ATCC 700364, DSM 12408, G. algens
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