Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ctrA_2Nucleoside-diphosphate sugar epimerase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)    
Predicted Functional Partners:
OSI13308.1
Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
ctrA_1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.923
etp
Phosphotyrosine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.874
wcaJ
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.825
ctrB
Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.716
lipA_1
beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.677
ctrC
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.628
hifA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.547
ctrD
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.536
OSI06679.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.536
Your Current Organism:
Neisseria canis
NCBI taxonomy Id: 493
Other names: ATCC 14687, CIP 103347, LMG 8383, LMG:8383, N. canis, NCTC 10296, strain H 6
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