STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaCHydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)    
Predicted Functional Partners:
nfdA
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.904
OSI12900.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.904
OSI12897.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.761
yhhW_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family.
 
     0.505
OSI12902.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
yhhW_3
Quercetin 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family.
 
    0.481
katA
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.
   
   0.461
OSI12134.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
wrbA
NAD(P)H:quinone oxidoreductase, type IV; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WrbA family.
   
    0.428
ygaU
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.422
Your Current Organism:
Neisseria canis
NCBI taxonomy Id: 493
Other names: ATCC 14687, CIP 103347, LMG 8383, LMG:8383, N. canis, NCTC 10296, strain H 6
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.