lipB_1 protein (Neisseria canis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Neisseria canis

NCBI taxonomy Id: 493
Other names: ATCC 14687, CIP 103347, LMG 8383, LMG:8383, N. canis, NCTC 10296, strain H 6

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSI06679.1	ctrA_1	BWD07_12345	BWD07_11535	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
OSI06679.1	ctrB	BWD07_12345	BWD07_11540	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
OSI06679.1	ctrC	BWD07_12345	BWD07_11545	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OSI06679.1	lipA_1	BWD07_12345	BWD07_11530	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
OSI06679.1	lipB_1	BWD07_12345	BWD07_09365	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
ctrA_1	OSI06679.1	BWD07_11535	BWD07_12345	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
ctrA_1	ctrB	BWD07_11535	BWD07_11540	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ctrA_1	ctrC	BWD07_11535	BWD07_11545	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ctrA_1	ctrD	BWD07_11535	BWD07_11550	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
ctrA_1	kdsD	BWD07_11535	BWD07_00145	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-arabinose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily.	0.465
ctrA_1	lipA_1	BWD07_11535	BWD07_11530	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
ctrA_1	lipB_1	BWD07_11535	BWD07_09365	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
ctrB	OSI06679.1	BWD07_11540	BWD07_12345	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
ctrB	ctrA_1	BWD07_11540	BWD07_11535	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ctrB	ctrC	BWD07_11540	BWD07_11545	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ctrB	ctrD	BWD07_11540	BWD07_11550	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ctrB	lipA_1	BWD07_11540	BWD07_11530	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
ctrB	lipB_1	BWD07_11540	BWD07_09365	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
ctrC	OSI06679.1	BWD07_11545	BWD07_12345	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ctrC	ctrA_1	BWD07_11545	BWD07_11535	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998