Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OSI10776.1 | lolA | BWD07_10280 | BWD07_10270 | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.497 |
| OSI10776.1 | pth | BWD07_10280 | BWD07_10285 | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.751 |
| OSI10776.1 | ratA | BWD07_10280 | BWD07_10275 | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.910 |
| OSI10776.1 | regG | BWD07_10280 | BWD07_05615 | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.431 |
| OSI10776.1 | rnfB | BWD07_10280 | BWD07_03335 | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.728 |
| OSI10776.1 | yqiC | BWD07_10280 | BWD07_10170 | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.412 |
| lolA | OSI10776.1 | BWD07_10270 | BWD07_10280 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | 0.497 |
| lolA | ratA | BWD07_10270 | BWD07_10275 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.419 |
| lolA | regG | BWD07_10270 | BWD07_05615 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.514 |
| pth | OSI10776.1 | BWD07_10285 | BWD07_10280 | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | 0.751 |
| pth | ratA | BWD07_10285 | BWD07_10275 | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.749 |
| ratA | OSI10776.1 | BWD07_10275 | BWD07_10280 | Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | 0.910 |
| ratA | lolA | BWD07_10275 | BWD07_10270 | Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.419 |
| ratA | pth | BWD07_10275 | BWD07_10285 | Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.749 |
| regG | OSI10776.1 | BWD07_05615 | BWD07_10280 | ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | 0.431 |
| regG | lolA | BWD07_05615 | BWD07_10270 | ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.514 |
| regG | rnfB | BWD07_05615 | BWD07_03335 | ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.538 |
| regG | yqiC | BWD07_05615 | BWD07_10170 | ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.589 |
| rnfB | OSI10776.1 | BWD07_03335 | BWD07_10280 | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | RnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. | 0.728 |
| rnfB | regG | BWD07_03335 | BWD07_05615 | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.538 |
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