OSI10552.1 protein (Neisseria canis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Neisseria canis

NCBI taxonomy Id: 493
Other names: ATCC 14687, CIP 103347, LMG 8383, LMG:8383, N. canis, NCTC 10296, strain H 6

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSI10550.1	OSI10552.1	BWD07_10395	BWD07_10405	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.493
OSI10550.1	moeB	BWD07_10395	BWD07_10400	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
OSI10550.1	scpA	BWD07_10395	BWD07_10410	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Segregation/condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.	0.450
OSI10552.1	OSI10550.1	BWD07_10405	BWD07_10395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
OSI10552.1	OSI12078.1	BWD07_10405	BWD07_07470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.559
OSI10552.1	OSI12852.1	BWD07_10405	BWD07_03140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
OSI10552.1	lolA	BWD07_10405	BWD07_10270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.559
OSI10552.1	moeB	BWD07_10405	BWD07_10400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
OSI10552.1	nlpD_1	BWD07_10405	BWD07_07175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
OSI10552.1	nlpD_2	BWD07_10405	BWD07_08730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
OSI10552.1	pncB2	BWD07_10405	BWD07_10415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.	0.470
OSI10552.1	scpA	BWD07_10405	BWD07_10410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Segregation/condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.	0.689
OSI12078.1	OSI10552.1	BWD07_07470	BWD07_10405	Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.559
OSI12852.1	OSI10552.1	BWD07_03140	BWD07_10405	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.429
OSI12852.1	nlpD_1	BWD07_03140	BWD07_07175	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
OSI12852.1	nlpD_2	BWD07_03140	BWD07_08730	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
lolA	OSI10552.1	BWD07_10270	BWD07_10405	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.559
moeB	OSI10550.1	BWD07_10400	BWD07_10395	tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
moeB	OSI10552.1	BWD07_10400	BWD07_10405	tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.720
moeB	pncB2	BWD07_10400	BWD07_10415	tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.	0.434