STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GARC_1663AcnD-accessory protein PrpF. (411 aa)    
Predicted Functional Partners:
acnA
Aconitate hydratase 1.
 
 
 0.991
acn
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.944
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.943
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
  
 0.888
GARC_1667
GntR family transcriptional regulator.
 
  
 0.801
gatA
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A; Belongs to the amidase family.
     
  0.739
vanB
Vanillate monooxygenase.
     
  0.739
amiE
Amidase.
     
  0.739
acnB
Aconitate hydratase 2.
    
 0.723
acnB-2
Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family.
    
 0.723
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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