STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GARC_1709Arylsulfatase B. (454 aa)    
Predicted Functional Partners:
GARC_4276
Hypothetical protein.
 
 
   0.609
GARC_1622
Sulfatase modifying factor 1.
 
 
   0.549
GARC_4103
Hypothetical protein.
 
 
   0.548
GARC_2110
Small GTP-binding protein.
    
  0.541
GARC_3407
Hypothetical protein.
  
     0.534
GARC_5353
Hypothetical protein.
  
     0.529
GARC_1649
3-hydroxybutyrate dehydrogenase type 2.
  
   0.495
lacZ-2
Beta-galactosidase.
 
 0.489
GARC_1646
Hypothetical protein.
  
     0.487
lacZ
Beta-galactosidase.
 
 0.485
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.