STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GARC_1958Hypothetical protein. (970 aa)    
Predicted Functional Partners:
GARC_3395
Coagulation factor 5/8 type-like.
  
     0.714
GARC_3460
Hypothetical protein.
  
 
   0.676
GARC_1951
Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.663
GARC_1963
NlpC/P60 family protein.
 
     0.651
GARC_2504
Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.632
GARC_1959
Hypothetical protein.
  
     0.618
GARC_1955
Hypothetical protein.
 
     0.597
GARC_4861
Hypothetical protein.
  
     0.588
GARC_1544
Hypothetical protein.
  
     0.560
murR
HTH-type transcriptional regulator murR.
 
     0.550
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.