Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GARC_1998Hypothetical protein. (236 aa)    
Predicted Functional Partners:
GARC_4309
Hypothetical protein.
 
 0.852
GARC_2109
Diguanylate cyclase/phosphodiesterase.
  
 
  0.812
GARC_0658
Hypothetical protein.
 
0.803
GARC_1926
Hypothetical protein.
 
  0.803
GARC_2146
Diguanylate phosphodiesterase.
  
 
  0.793
GARC_1453
Hypothetical protein.
 
  0.792
GARC_4337
Diguanylate cyclase/phosphodiesterase.
  
 
  0.791
GARC_1091
Hypothetical protein.
  
 
  0.787
GARC_0158
Sensory box/GGDEF domain/EAL domain protein.
  
 
  0.785
GARC_4156
Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain.
  
 0.779
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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