Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GARC_2007TPR repeat-containing protein. (922 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.893
GARC_1254
Hypothetical protein.
  
 0.872
hlyB-3
Hemolysin secretion protein.
    
 0.856
GARC_4885
Hypothetical protein.
 
 
   0.779
GARC_1050
Hypothetical protein.
  
 
  0.776
GARC_1558
Hypothetical protein.
  
     0.773
GARC_3364
Hypothetical protein.
 
 
   0.772
GARC_1749
Type IV pilus assembly PilZ.
  
     0.759
GARC_3528
Hypothetical protein; Degrades oligopeptides; Belongs to the peptidase S41B family.
   
   0.751
tri
Tricorn protease; Degrades oligopeptides; Belongs to the peptidase S41B family.
   
   0.751
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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