STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GARC_2195ABC-2 type transport system ATP-binding protein. (286 aa)    
Predicted Functional Partners:
GARC_2196
Hypothetical protein.
 
     0.949
GARC_2194
Hypothetical protein.
 
    0.944
GARC_1287
Hypothetical protein.
  
 0.719
GARC_4178
ATP-binding cassette, subfamily B, bacterial.
  
 
  0.672
msbA
ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
  0.671
GARC_0276
ABC transporter related protein.
  
 
0.641
ytrA
GntR family transcriptional regulator.
 
    0.636
GARC_2999
ATP-binding cassette, subfamily B, bacterial.
    
  0.623
GARC_3000
ATP-binding cassette, subfamily B, bacterial.
    
  0.623
GARC_3845
ATP-binding cassette, subfamily B, bacterial.
    
  0.623
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.