Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GARC_0592 | GARC_0595 | GARC_0592 | GARC_0595 | Hypothetical protein. | Hypothetical protein. | 0.923 |
GARC_0592 | alc | GARC_0592 | GARC_2481 | Hypothetical protein. | Allantoicase; Belongs to the allantoicase family. | 0.517 |
GARC_0592 | allA | GARC_0592 | GARC_2480 | Hypothetical protein. | Ureidoglycolate hydrolase. | 0.809 |
GARC_0592 | rutR-2 | GARC_0592 | GARC_2478 | Hypothetical protein. | TetR/AcrR family transcriptional regulator. | 0.727 |
GARC_0595 | GARC_0592 | GARC_0595 | GARC_0592 | Hypothetical protein. | Hypothetical protein. | 0.923 |
GARC_0595 | alc | GARC_0595 | GARC_2481 | Hypothetical protein. | Allantoicase; Belongs to the allantoicase family. | 0.885 |
GARC_0595 | allA | GARC_0595 | GARC_2480 | Hypothetical protein. | Ureidoglycolate hydrolase. | 0.817 |
GARC_0595 | rutR-2 | GARC_0595 | GARC_2478 | Hypothetical protein. | TetR/AcrR family transcriptional regulator. | 0.416 |
GARC_0595 | ureA | GARC_0595 | GARC_1015 | Hypothetical protein. | Urease subunit gamma; Belongs to the urease gamma subunit family. | 0.524 |
GARC_0595 | ureB | GARC_0595 | GARC_1016 | Hypothetical protein. | Urease subunit beta; Belongs to the urease beta subunit family. | 0.524 |
GARC_0595 | ureC | GARC_0595 | GARC_1017 | Hypothetical protein. | Urease subunit alpha. | 0.522 |
aceA | allA | GARC_5036 | GARC_2480 | Isocitrate lyase. | Ureidoglycolate hydrolase. | 0.812 |
aceA | glcB | GARC_5036 | GARC_2479 | Isocitrate lyase. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.981 |
aceA | glcB-2 | GARC_5036 | GARC_5038 | Isocitrate lyase. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.986 |
alc | GARC_0592 | GARC_2481 | GARC_0592 | Allantoicase; Belongs to the allantoicase family. | Hypothetical protein. | 0.517 |
alc | GARC_0595 | GARC_2481 | GARC_0595 | Allantoicase; Belongs to the allantoicase family. | Hypothetical protein. | 0.885 |
alc | allA | GARC_2481 | GARC_2480 | Allantoicase; Belongs to the allantoicase family. | Ureidoglycolate hydrolase. | 0.986 |
alc | glcB | GARC_2481 | GARC_2479 | Allantoicase; Belongs to the allantoicase family. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.655 |
alc | rutR-2 | GARC_2481 | GARC_2478 | Allantoicase; Belongs to the allantoicase family. | TetR/AcrR family transcriptional regulator. | 0.613 |
alc | ureA | GARC_2481 | GARC_1015 | Allantoicase; Belongs to the allantoicase family. | Urease subunit gamma; Belongs to the urease gamma subunit family. | 0.600 |
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