Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GARC_2493 | sbcB | GARC_2493 | GARC_2492 | Hypothetical protein. | Exodeoxyribonuclease I. | 0.480 |
rdgC | sbcB | GARC_4572 | GARC_2492 | Recombination associated protein RdgC; May be involved in recombination; Belongs to the RdgC family. | Exodeoxyribonuclease I. | 0.457 |
recB | sbcB | GARC_3005 | GARC_2492 | Exodeoxyribonuclease V beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and rep [...] | Exodeoxyribonuclease I. | 0.413 |
recJ | rnhA | GARC_4426 | GARC_3435 | single-stranded-DNA-specific exonuclease. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.479 |
recJ | sbcB | GARC_4426 | GARC_2492 | single-stranded-DNA-specific exonuclease. | Exodeoxyribonuclease I. | 0.603 |
recJ | ssb | GARC_4426 | GARC_1598 | single-stranded-DNA-specific exonuclease. | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.647 |
rnhA | recJ | GARC_3435 | GARC_4426 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | single-stranded-DNA-specific exonuclease. | 0.479 |
rnhA | sbcB | GARC_3435 | GARC_2492 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Exodeoxyribonuclease I. | 0.491 |
rnhA | ssb | GARC_3435 | GARC_1598 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.888 |
sbcB | GARC_2493 | GARC_2492 | GARC_2493 | Exodeoxyribonuclease I. | Hypothetical protein. | 0.480 |
sbcB | rdgC | GARC_2492 | GARC_4572 | Exodeoxyribonuclease I. | Recombination associated protein RdgC; May be involved in recombination; Belongs to the RdgC family. | 0.457 |
sbcB | recB | GARC_2492 | GARC_3005 | Exodeoxyribonuclease I. | Exodeoxyribonuclease V beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and rep [...] | 0.413 |
sbcB | recJ | GARC_2492 | GARC_4426 | Exodeoxyribonuclease I. | single-stranded-DNA-specific exonuclease. | 0.603 |
sbcB | rnhA | GARC_2492 | GARC_3435 | Exodeoxyribonuclease I. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.491 |
sbcB | ssb | GARC_2492 | GARC_1598 | Exodeoxyribonuclease I. | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.889 |
ssb | recJ | GARC_1598 | GARC_4426 | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | single-stranded-DNA-specific exonuclease. | 0.647 |
ssb | rnhA | GARC_1598 | GARC_3435 | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.888 |
ssb | sbcB | GARC_1598 | GARC_2492 | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Exodeoxyribonuclease I. | 0.889 |