STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GARC_2641Secreted metalloprotease. (757 aa)    
Predicted Functional Partners:
GARC_5107
Hypothetical protein.
     
 0.843
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.771
GARC_1530
1-alkyl-2-acetylglycerophosphocholine esterase.
  
 0.759
GARC_4529
1-alkyl-2-acetylglycerophosphocholine esterase.
  
 0.759
GARC_1412
Hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
 0.682
GARC_4413
Alpha amylase domain-containing protein.
  
 0.599
GARC_5135
Hypothetical protein.
  
 0.595
GARC_3223
Collagenase family protein.
  
 
  0.565
GARC_2362
Hypothetical protein.
  
 
  0.564
GARC_3406
Sialate O-acetylesterase.
   
 0.541
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.