Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GARC_0318 | GARC_3432 | GARC_0318 | GARC_3432 | Hypothetical protein. | Hypothetical protein. | 0.695 |
GARC_0318 | GARC_4624 | GARC_0318 | GARC_4624 | Hypothetical protein. | OmpA domain-containing protein. | 0.629 |
GARC_0318 | lpxA | GARC_0318 | GARC_2912 | Hypothetical protein. | UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.443 |
GARC_0318 | lpxD | GARC_0318 | GARC_2914 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.555 |
GARC_0318 | rseP | GARC_0318 | GARC_2917 | Hypothetical protein. | Regulator of sigma E protease. | 0.741 |
GARC_0318 | skp | GARC_0318 | GARC_2915 | Hypothetical protein. | Chaperone protein skp; Belongs to the skp family. | 0.699 |
GARC_3432 | GARC_0318 | GARC_3432 | GARC_0318 | Hypothetical protein. | Hypothetical protein. | 0.695 |
GARC_3432 | skp | GARC_3432 | GARC_2915 | Hypothetical protein. | Chaperone protein skp; Belongs to the skp family. | 0.887 |
GARC_4624 | GARC_0318 | GARC_4624 | GARC_0318 | OmpA domain-containing protein. | Hypothetical protein. | 0.629 |
GARC_4624 | skp | GARC_4624 | GARC_2915 | OmpA domain-containing protein. | Chaperone protein skp; Belongs to the skp family. | 0.871 |
dnaE | fabZ | GARC_2909 | GARC_2913 | DNA polymerase III subunit alpha. | 3R-hydroxymyristoyl ACP dehydrase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.833 |
dnaE | lpxA | GARC_2909 | GARC_2912 | DNA polymerase III subunit alpha. | UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.822 |
dnaE | lpxD | GARC_2909 | GARC_2914 | DNA polymerase III subunit alpha. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.741 |
dnaE | rseP | GARC_2909 | GARC_2917 | DNA polymerase III subunit alpha. | Regulator of sigma E protease. | 0.419 |
dnaE | skp | GARC_2909 | GARC_2915 | DNA polymerase III subunit alpha. | Chaperone protein skp; Belongs to the skp family. | 0.681 |
dnaE | yaeT | GARC_2909 | GARC_2916 | DNA polymerase III subunit alpha. | Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.630 |
fabZ | dnaE | GARC_2913 | GARC_2909 | 3R-hydroxymyristoyl ACP dehydrase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | DNA polymerase III subunit alpha. | 0.833 |
fabZ | lpxA | GARC_2913 | GARC_2912 | 3R-hydroxymyristoyl ACP dehydrase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.995 |
fabZ | lpxD | GARC_2913 | GARC_2914 | 3R-hydroxymyristoyl ACP dehydrase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.963 |
fabZ | rseP | GARC_2913 | GARC_2917 | 3R-hydroxymyristoyl ACP dehydrase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | Regulator of sigma E protease. | 0.594 |
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