Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GARC_3333Hypothetical protein. (437 aa)    
Predicted Functional Partners:
GARC_3331
Hypothetical protein.
 
 
   0.985
GARC_3335
Hypothetical protein.
 
 
 
 0.984
GARC_3334
Hypothetical protein.
 
 
 0.969
GARC_3350
Hypothetical protein.
 
 
 
 0.939
GARC_3354
Hypothetical protein.
 
 
   0.939
GARC_3351
Hypothetical protein.
 
 
 0.891
GARC_3332
Hypothetical protein.
       0.773
GARC_3330
Hypothetical protein.
       0.768
GARC_3290
ISSod10, transposase OrfB.
  
 
 0.479
GARC_3700
Hypothetical protein.
  
 
 0.479
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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