Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GARC_3545Conserved hypothetical protein. (1115 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
 0.748
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.734
GARC_5107
Hypothetical protein.
    
 0.715
GARC_2027
Predicted metal-dependent amidohydrolase with the TIM-barrel fold protein.
 
     0.595
GARC_3544
Cytochrome b561 family protein.
       0.586
hutH
Histidine ammonia-lyase.
  
  
 0.578
hutH-2
Histidine ammonia-lyase.
  
  
 0.578
GARC_1659
Hypothetical protein.
  
  
 0.568
GARC_0022
Secreted protein.
  
     0.566
GARC_1011
Phosphoglycerate mutase.
  
     0.566
Your Current Organism:
Paraglaciecola arctica
NCBI taxonomy Id: 493475
Other names: Glaciecola arctica BSs20135, Glaciecola arctica str. BSs20135, Glaciecola arctica strain BSs20135, Glaciecola sp. BSs20135, P. arctica BSs20135, Paraglaciecola arctica BSs20135
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