Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GARC_2110 | hlyX | GARC_2110 | GARC_5100 | Small GTP-binding protein. | Regulatory protein hlyX. | 0.811 |
GARC_2110 | rpoA | GARC_2110 | GARC_5140 | Small GTP-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.409 |
GARC_2110 | rpoB | GARC_2110 | GARC_3859 | Small GTP-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.418 |
GARC_4156 | GARC_4270 | GARC_4156 | GARC_4270 | Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain. | Sensory box histidine kinase/response regulator. | 0.999 |
GARC_4156 | GARC_4309 | GARC_4156 | GARC_4309 | Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain. | Hypothetical protein. | 0.999 |
GARC_4156 | barA | GARC_4156 | GARC_3316 | Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain. | Signal transduction histidine-protein kinase BarA. | 0.999 |
GARC_4156 | gltB | GARC_4156 | GARC_3626 | Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain. | Glutamate synthase (NADPH/NADH) large chain. | 0.508 |
GARC_4156 | hlyX | GARC_4156 | GARC_5100 | Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain. | Regulatory protein hlyX. | 0.687 |
GARC_4270 | GARC_4156 | GARC_4270 | GARC_4156 | Sensory box histidine kinase/response regulator. | Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain. | 0.999 |
GARC_4270 | GARC_4309 | GARC_4270 | GARC_4309 | Sensory box histidine kinase/response regulator. | Hypothetical protein. | 0.999 |
GARC_4270 | barA | GARC_4270 | GARC_3316 | Sensory box histidine kinase/response regulator. | Signal transduction histidine-protein kinase BarA. | 0.999 |
GARC_4270 | gltB | GARC_4270 | GARC_3626 | Sensory box histidine kinase/response regulator. | Glutamate synthase (NADPH/NADH) large chain. | 0.484 |
GARC_4270 | hlyX | GARC_4270 | GARC_5100 | Sensory box histidine kinase/response regulator. | Regulatory protein hlyX. | 0.789 |
GARC_4309 | GARC_4156 | GARC_4309 | GARC_4156 | Hypothetical protein. | Sensor histidine kinase; With multiple PAS/PAC and a response regulator receiver domain. | 0.999 |
GARC_4309 | GARC_4270 | GARC_4309 | GARC_4270 | Hypothetical protein. | Sensory box histidine kinase/response regulator. | 0.999 |
GARC_4309 | barA | GARC_4309 | GARC_3316 | Hypothetical protein. | Signal transduction histidine-protein kinase BarA. | 0.999 |
GARC_4309 | gltB | GARC_4309 | GARC_3626 | Hypothetical protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.624 |
GARC_4309 | hlyX | GARC_4309 | GARC_5100 | Hypothetical protein. | Regulatory protein hlyX. | 0.872 |
GARC_4309 | putA | GARC_4309 | GARC_2001 | Hypothetical protein. | Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.449 |
GARC_4309 | rpoB | GARC_4309 | GARC_3859 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.443 |
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