STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A068UDH0TOG domain-containing protein. (1261 aa)    
Predicted Functional Partners:
A0A068TU79
PSP domain-containing protein.
   
 0.992
A0A068V7T1
RRM domain-containing protein.
   
 0.991
A0A068TSI9
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.988
A0A068UU41
Uncharacterized protein.
   
 0.986
A0A068UA57
Matrin-type domain-containing protein.
   
 0.984
A0A068UR70
Uncharacterized protein.
   
 0.979
111O18.6
Uncharacterized protein.
    
 0.978
A0A068TQR7
LRRcap domain-containing protein.
   
 0.977
A0A068U4S2
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.977
A0A068V8E2
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.975
Your Current Organism:
Coffea canephora
NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.