STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A068VGH7Uncharacterized protein. (899 aa)    
Predicted Functional Partners:
A0A068TUD5
WAPL domain-containing protein.
   
 0.940
A0A068V4B4
SMC hinge domain-containing protein.
   
 0.926
A0A068V4N6
SMC_N domain-containing protein.
   
 0.926
A0A068U5K3
SMC_N domain-containing protein.
   
 0.910
A0A068U643
SMC hinge domain-containing protein.
   
 0.910
A0A068UKT0
DUF641 domain-containing protein.
   
 0.910
A0A068U3V0
Sister chromatid cohesion protein.
   
 0.888
A0A068U958
Uncharacterized protein.
  
 0.886
A0A068TX44
Uncharacterized protein.
    
 0.873
A0A068UPZ1
Uncharacterized protein.
    
 0.873
Your Current Organism:
Coffea canephora
NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.