STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A068VQF8Uncharacterized protein. (260 aa)    
Predicted Functional Partners:
A0A068TPU7
Uncharacterized protein.
    
 0.892
A0A068TQW1
Uncharacterized protein.
    
 0.892
A0A068UDJ6
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.846
A0A068UMX2
CENP-T_C domain-containing protein.
    
 0.846
A0A068TU52
Uncharacterized protein.
   
 0.819
A0A068TMR7
RPOLD domain-containing protein.
    
 0.806
A0A068TYX8
Histone H3; Belongs to the histone H3 family.
   
 0.787
A0A068U1M1
Uncharacterized protein.
   
 0.787
A0A068UJM2
Histone domain-containing protein.
   
 0.787
A0A068ULF0
Histone domain-containing protein.
   
 0.787
Your Current Organism:
Coffea canephora
NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.