Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE50847.1 | SHE50939.1 | SAMN04487965_0043 | SAMN04487965_0045 | Transcriptional regulator, TetR family. | MscS family membrane protein. | 0.526 |
SHE50847.1 | nagZ | SAMN04487965_0043 | SAMN04487965_0044 | Transcriptional regulator, TetR family. | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.627 |
SHE50939.1 | SHE50847.1 | SAMN04487965_0045 | SAMN04487965_0043 | MscS family membrane protein. | Transcriptional regulator, TetR family. | 0.526 |
SHE50939.1 | SHE51080.1 | SAMN04487965_0045 | SAMN04487965_0048 | MscS family membrane protein. | Peptidoglycan-binding protein, CsiV. | 0.452 |
SHE50939.1 | SHE68975.1 | SAMN04487965_0045 | SAMN04487965_0440 | MscS family membrane protein. | Predicted Kef-type K+ transport protein, K+/H+ antiporter domain. | 0.457 |
SHE50939.1 | gcvP | SAMN04487965_0045 | SAMN04487965_2190 | MscS family membrane protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.483 |
SHE50939.1 | nagZ | SAMN04487965_0045 | SAMN04487965_0044 | MscS family membrane protein. | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.666 |
SHE51080.1 | SHE50939.1 | SAMN04487965_0048 | SAMN04487965_0045 | Peptidoglycan-binding protein, CsiV. | MscS family membrane protein. | 0.452 |
SHE68975.1 | SHE50939.1 | SAMN04487965_0440 | SAMN04487965_0045 | Predicted Kef-type K+ transport protein, K+/H+ antiporter domain. | MscS family membrane protein. | 0.457 |
gcvP | SHE50939.1 | SAMN04487965_2190 | SAMN04487965_0045 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | MscS family membrane protein. | 0.483 |
nagZ | SHE50847.1 | SAMN04487965_0044 | SAMN04487965_0043 | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | Transcriptional regulator, TetR family. | 0.627 |
nagZ | SHE50939.1 | SAMN04487965_0044 | SAMN04487965_0045 | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | MscS family membrane protein. | 0.666 |