Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE50162.1 | SHE83270.1 | SAMN04487965_0027 | SAMN04487965_0746 | Ribosome modulation factor. | Uncharacterized conserved protein YaeQ, suppresses RfaH defect. | 0.723 |
SHE50162.1 | SHF29965.1 | SAMN04487965_0027 | SAMN04487965_1872 | Ribosome modulation factor. | Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake. | 0.470 |
SHE50162.1 | SHF60894.1 | SAMN04487965_0027 | SAMN04487965_2376 | Ribosome modulation factor. | Transcriptional regulator, TetR family. | 0.489 |
SHE50162.1 | kduI | SAMN04487965_0027 | SAMN04487965_2534 | Ribosome modulation factor. | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.491 |
SHE50162.1 | parC | SAMN04487965_0027 | SAMN04487965_1594 | Ribosome modulation factor. | Topoisomerase-4 subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | 0.550 |
SHE83149.1 | SHE83190.1 | SAMN04487965_0743 | SAMN04487965_0744 | Uracil-DNA glycosylase. | Hypothetical protein. | 0.723 |
SHE83149.1 | SHE83228.1 | SAMN04487965_0743 | SAMN04487965_0745 | Uracil-DNA glycosylase. | Hypothetical protein; Belongs to the UPF0234 family. | 0.727 |
SHE83149.1 | SHE83270.1 | SAMN04487965_0743 | SAMN04487965_0746 | Uracil-DNA glycosylase. | Uncharacterized conserved protein YaeQ, suppresses RfaH defect. | 0.632 |
SHE83149.1 | SHE83310.1 | SAMN04487965_0743 | SAMN04487965_0747 | Uracil-DNA glycosylase. | LemA protein. | 0.469 |
SHE83149.1 | ung | SAMN04487965_0743 | SAMN04487965_0742 | Uracil-DNA glycosylase. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.829 |
SHE83190.1 | SHE83149.1 | SAMN04487965_0744 | SAMN04487965_0743 | Hypothetical protein. | Uracil-DNA glycosylase. | 0.723 |
SHE83190.1 | SHE83228.1 | SAMN04487965_0744 | SAMN04487965_0745 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0234 family. | 0.776 |
SHE83190.1 | SHE83270.1 | SAMN04487965_0744 | SAMN04487965_0746 | Hypothetical protein. | Uncharacterized conserved protein YaeQ, suppresses RfaH defect. | 0.668 |
SHE83190.1 | SHE83310.1 | SAMN04487965_0744 | SAMN04487965_0747 | Hypothetical protein. | LemA protein. | 0.476 |
SHE83190.1 | ung | SAMN04487965_0744 | SAMN04487965_0742 | Hypothetical protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.672 |
SHE83228.1 | SHE83149.1 | SAMN04487965_0745 | SAMN04487965_0743 | Hypothetical protein; Belongs to the UPF0234 family. | Uracil-DNA glycosylase. | 0.727 |
SHE83228.1 | SHE83190.1 | SAMN04487965_0745 | SAMN04487965_0744 | Hypothetical protein; Belongs to the UPF0234 family. | Hypothetical protein. | 0.776 |
SHE83228.1 | SHE83270.1 | SAMN04487965_0745 | SAMN04487965_0746 | Hypothetical protein; Belongs to the UPF0234 family. | Uncharacterized conserved protein YaeQ, suppresses RfaH defect. | 0.750 |
SHE83228.1 | SHE83310.1 | SAMN04487965_0745 | SAMN04487965_0747 | Hypothetical protein; Belongs to the UPF0234 family. | LemA protein. | 0.479 |
SHE83228.1 | ung | SAMN04487965_0745 | SAMN04487965_0742 | Hypothetical protein; Belongs to the UPF0234 family. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.667 |
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