STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE92668.1Aminobenzoyl-glutamate utilization protein B. (485 aa)    
Predicted Functional Partners:
SHF79257.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.820
SHE68687.1
Amidohydrolase family protein.
 
     0.640
SHE61002.1
Amidohydrolase family protein.
 
     0.542
SHG22969.1
Oxidoreductase family, NAD-binding Rossmann fold.
 
     0.499
SHE92629.1
Carboxymethylenebutenolidase.
       0.450
SHF99725.1
Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03.
 
  
  0.444
SHF62458.1
Intracellular sulfur oxidation protein, DsrE/DsrF family.
 
     0.437
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.437
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
  
  
 0.413
SHE79452.1
Imidazolonepropionase.
 
     0.409
Your Current Organism:
Microbulbifer donghaiensis
NCBI taxonomy Id: 494016
Other names: CGMCC 1.7063, JCM 15145, M. donghaiensis, Microbulbifer donghaiensis Wang et al. 2009, Microbulbifer sp. CN85, strain CN85
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