STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF06021.1Ribosomal protein L7/L12 C-terminal domain-containing protein. (163 aa)    
Predicted Functional Partners:
SHF06134.1
DNA transformation protein.
 
     0.812
SHF06098.1
LD-carboxypeptidase LdcB, LAS superfamily.
 
     0.783
SHG06137.1
Hypothetical protein.
  
    0.770
SHE74642.1
Hypothetical protein.
  
     0.764
SHF00339.1
Hypothetical protein.
  
     0.757
SHF33762.1
Hypothetical protein.
  
     0.753
SHG20854.1
Protein of unknown function.
  
     0.752
SHG23545.1
Protein of unknown function.
  
     0.747
SHF06060.1
Serine O-acetyltransferase.
       0.742
SHG23575.1
Protein of unknown function.
  
     0.727
Your Current Organism:
Microbulbifer donghaiensis
NCBI taxonomy Id: 494016
Other names: CGMCC 1.7063, JCM 15145, M. donghaiensis, Microbulbifer donghaiensis Wang et al. 2009, Microbulbifer sp. CN85, strain CN85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.