Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE53126.1 | SHF13394.1 | SAMN04487965_0092 | SAMN04487965_1446 | Glycosyl transferases group 1. | Glycosyl transferase family 8. | 0.438 |
SHE74065.1 | SHF13394.1 | SAMN04487965_0549 | SAMN04487965_1446 | Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glycosyl transferase family 8. | 0.555 |
SHF13394.1 | SHE53126.1 | SAMN04487965_1446 | SAMN04487965_0092 | Glycosyl transferase family 8. | Glycosyl transferases group 1. | 0.438 |
SHF13394.1 | SHE74065.1 | SAMN04487965_1446 | SAMN04487965_0549 | Glycosyl transferase family 8. | Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.555 |
SHF13394.1 | SHF23198.1 | SAMN04487965_1446 | SAMN04487965_1693 | Glycosyl transferase family 8. | Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. | 0.529 |
SHF13394.1 | SHF23288.1 | SAMN04487965_1446 | SAMN04487965_1696 | Glycosyl transferase family 8. | Hypothetical protein. | 0.517 |
SHF13394.1 | SHF87579.1 | SAMN04487965_1446 | SAMN04487965_2825 | Glycosyl transferase family 8. | O-antigen ligase. | 0.621 |
SHF13394.1 | SHF87755.1 | SAMN04487965_1446 | SAMN04487965_2830 | Glycosyl transferase family 8. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.488 |
SHF13394.1 | SHF89994.1 | SAMN04487965_1446 | SAMN04487965_2899 | Glycosyl transferase family 8. | 5,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family. | 0.513 |
SHF13394.1 | atpE-2 | SAMN04487965_1446 | SAMN04487965_1915 | Glycosyl transferase family 8. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.403 |
SHF13394.1 | ubiB | SAMN04487965_1446 | SAMN04487965_1780 | Glycosyl transferase family 8. | 2-octaprenylphenol hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily. | 0.524 |
SHF23198.1 | SHF13394.1 | SAMN04487965_1693 | SAMN04487965_1446 | Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. | Glycosyl transferase family 8. | 0.529 |
SHF23198.1 | SHF23288.1 | SAMN04487965_1693 | SAMN04487965_1696 | Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. | Hypothetical protein. | 0.906 |
SHF23198.1 | SHF87579.1 | SAMN04487965_1693 | SAMN04487965_2825 | Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. | O-antigen ligase. | 0.967 |
SHF23288.1 | SHF13394.1 | SAMN04487965_1696 | SAMN04487965_1446 | Hypothetical protein. | Glycosyl transferase family 8. | 0.517 |
SHF23288.1 | SHF23198.1 | SAMN04487965_1696 | SAMN04487965_1693 | Hypothetical protein. | Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. | 0.906 |
SHF23288.1 | SHF87755.1 | SAMN04487965_1696 | SAMN04487965_2830 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.427 |
SHF87579.1 | SHF13394.1 | SAMN04487965_2825 | SAMN04487965_1446 | O-antigen ligase. | Glycosyl transferase family 8. | 0.621 |
SHF87579.1 | SHF23198.1 | SAMN04487965_2825 | SAMN04487965_1693 | O-antigen ligase. | Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. | 0.967 |
SHF87579.1 | SHF87755.1 | SAMN04487965_2825 | SAMN04487965_2830 | O-antigen ligase. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.703 |
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