STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF13691.1Glycosyl transferase family 64 domain-containing protein. (298 aa)    
Predicted Functional Partners:
SHG13109.1
Hypothetical protein.
    
 0.900
SHF87693.1
PhoP regulatory network protein YrbL.
 
 
  0.855
SHE69711.1
Hypothetical protein.
   
    0.493
SHF87126.1
Tetratricopeptide repeat-containing protein.
 
 0.469
SHF23063.1
Capsular exopolysaccharide family.
     
 0.459
SHF13733.1
HD domain-containing protein.
       0.404
Your Current Organism:
Microbulbifer donghaiensis
NCBI taxonomy Id: 494016
Other names: CGMCC 1.7063, JCM 15145, M. donghaiensis, Microbulbifer donghaiensis Wang et al. 2009, Microbulbifer sp. CN85, strain CN85
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