Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE73808.1 | SHE79775.1 | SAMN04487965_0544 | SAMN04487965_0676 | Aspartate aminotransferase. | Dipeptidase D. | 0.851 |
SHE73808.1 | SHF14985.1 | SAMN04487965_0544 | SAMN04487965_1486 | Aspartate aminotransferase. | Dipeptidase D. | 0.453 |
SHE73808.1 | argA | SAMN04487965_0544 | SAMN04487965_2815 | Aspartate aminotransferase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.958 |
SHE79775.1 | SHE73808.1 | SAMN04487965_0676 | SAMN04487965_0544 | Dipeptidase D. | Aspartate aminotransferase. | 0.851 |
SHE79775.1 | SHF14985.1 | SAMN04487965_0676 | SAMN04487965_1486 | Dipeptidase D. | Dipeptidase D. | 0.465 |
SHE79775.1 | glyA | SAMN04487965_0676 | SAMN04487965_1528 | Dipeptidase D. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.912 |
SHE79775.1 | gshB | SAMN04487965_0676 | SAMN04487965_2729 | Dipeptidase D. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.950 |
SHF14985.1 | SHE73808.1 | SAMN04487965_1486 | SAMN04487965_0544 | Dipeptidase D. | Aspartate aminotransferase. | 0.453 |
SHF14985.1 | SHE79775.1 | SAMN04487965_1486 | SAMN04487965_0676 | Dipeptidase D. | Dipeptidase D. | 0.465 |
SHF14985.1 | SHF15022.1 | SAMN04487965_1486 | SAMN04487965_1487 | Dipeptidase D. | Hypothetical protein. | 0.470 |
SHF14985.1 | SHF59880.1 | SAMN04487965_1486 | SAMN04487965_2352 | Dipeptidase D. | FAD/FMN-containing dehydrogenase. | 0.566 |
SHF14985.1 | argA | SAMN04487965_1486 | SAMN04487965_2815 | Dipeptidase D. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.596 |
SHF14985.1 | argC | SAMN04487965_1486 | SAMN04487965_2445 | Dipeptidase D. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.467 |
SHF14985.1 | argD | SAMN04487965_1486 | SAMN04487965_0929 | Dipeptidase D. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.508 |
SHF14985.1 | dapF | SAMN04487965_1486 | SAMN04487965_2767 | Dipeptidase D. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.473 |
SHF14985.1 | glyA | SAMN04487965_1486 | SAMN04487965_1528 | Dipeptidase D. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.530 |
SHF14985.1 | gshB | SAMN04487965_1486 | SAMN04487965_2729 | Dipeptidase D. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.475 |
SHF15022.1 | SHF14985.1 | SAMN04487965_1487 | SAMN04487965_1486 | Hypothetical protein. | Dipeptidase D. | 0.470 |
SHF59880.1 | SHF14985.1 | SAMN04487965_2352 | SAMN04487965_1486 | FAD/FMN-containing dehydrogenase. | Dipeptidase D. | 0.566 |
argA | SHE73808.1 | SAMN04487965_2815 | SAMN04487965_0544 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Aspartate aminotransferase. | 0.958 |
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