STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG04333.1Uncharacterized conserved protein. (134 aa)    
Predicted Functional Partners:
SHF89852.1
PhnB protein.
    0.952
SHF89883.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.792
SHG04367.1
Uncharacterized conserved protein YbaA, DUF1428 family.
 
     0.767
SHG04447.1
Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase.
 
    0.574
SHF53738.1
PhnB protein.
 
    0.555
SHG26840.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.540
SHG19654.1
Predicted dithiol-disulfide oxidoreductase, DUF899 family.
 
    0.515
SHG04403.1
Uncharacterized membrane protein, DUF373 family.
       0.467
SHG04294.1
Long-chain acyl-CoA synthetase.
       0.414
Your Current Organism:
Microbulbifer donghaiensis
NCBI taxonomy Id: 494016
Other names: CGMCC 1.7063, JCM 15145, M. donghaiensis, Microbulbifer donghaiensis Wang et al. 2009, Microbulbifer sp. CN85, strain CN85
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