STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG05606.1Transcriptional regulator, XRE family with cupin sensor. (196 aa)    
Predicted Functional Partners:
SHF23198.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.947
SHG28447.1
Serine/threonine-protein kinase HipA.
  
 
 0.696
SHF87617.1
UDPglucose 6-dehydrogenase.
  
 
 0.618
SHE76942.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.592
SHF23063.1
Capsular exopolysaccharide family.
  
 
 0.589
SHE66763.1
Cupin domain protein; Manually curated.
  
 0.557
SHE71889.1
Hypothetical protein.
  
 0.557
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.
  
 0.557
SHF88473.1
Cupin domain-containing protein.
  
 0.557
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.552
Your Current Organism:
Microbulbifer donghaiensis
NCBI taxonomy Id: 494016
Other names: CGMCC 1.7063, JCM 15145, M. donghaiensis, Microbulbifer donghaiensis Wang et al. 2009, Microbulbifer sp. CN85, strain CN85
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